[Peer Reviewed Journal Articles]

2024:

  • Kelsey Meyer, Lindsey Williams, Krystin Ward, and Bonnie Brown, Oyster Grower Perspectives on Green Crab Interactions: Using Applied Social Science to Inform Research and Engagement. In review. Frontiers in Aquaculture.

  • Georgios Giannopoulos, Lars Elsgaard, Vasileios Tzanakakis, Rima B. Franklin, Bonnie L. Brown, Georgios Zanakis, Nikos Monokrousos, Ioannis Anastopoulos, Murad Awad, Ioannis Ipsilantis, Nikolaos Barbayiannis and Alexios N. Polidoros. Impact of nitrapyrin on urea-based fertilizers in a Mediterranean calcareous soil: nitrogen and microbial dynamics. In review. European Journal of Soil Science

  • Morse, Ryan, Julie Rose, Julie Reichert-Nguyen, Suzanne Bricker, Bonnie Brown, Colleen Higgins, Lisa Kellogg, Peter Kingsley-Smith, Mark, Luckenbach, Kennedy Paynter, Matt, Parker, Paige, Ross. Morphometrics and nutrient concentration of eastern oysters (Crassostrea virginica) sampled from Chesapeake Bay, USA [Data set]. In Panel Recommendations on the Oyster BMP Nutrient and Suspended Sediment Reduction Effectiveness Determination Decision Framework and Nitrogen and Phosphorus Assimilation in Oyster Tissue Reduction Effectiveness for Oyster Aquaculture Practices. Zenodo.

  • Jenkins JA, Draugelis-Dale RO, Hoffpauir NM, Baudoin BA, Matkin C, Driver L, Hodges S, Brown BL. Flow cytometric assessments of metabolic activity in bacterial assemblages provide insight into ecosystem condition along the Buffalo National River, Arkansas. Sci Total Environ. 921:170462.

  • Kelsey A. Meyer, Alyssa Stasse, Bo-Young Lee, Joseph L. Sevigny, Gabriela Bradt, and Bonnie L. Brown, Diet of the Range Expanding Blue Crab (Callinectes sapidus) in Great Bay Estuary, New Hampshire, in review. BMC Genomics.

  • Stasse A, B-Y Lee, B Brown. Haplosporidium nelsoni and Perkinsus marinus occurrence in water of Great Bay Estuary, NH. Diseases of Aquatic Organisms, 25:158:75-80.

2023:

  • Baudoin, BA, Brown, BL, Calfee, RD, Jenkins, JA. Amino Acid Variation at the Mitochondrial Binding Site of Antimycin A is Proposed to Reflect Sensitivity and Toxicity Differences among Fish Species. Fishes, 8:381.

  • Meyer, Kelsey et al. 2023. Green Crabs – Special Feature. Pp 120-124 in State of Our Estuaries 2023, Extended Report. Piscataqua Region Estuaries Partnership. https://www.StateOfOurEstuaries.org/2023- reports/extended-report

  • Brown B., G Moore, H Mogensen, T Sims-Harper, J Gibson, B-Y Lee, C Wardinski, G Jarrett. A baseline for microplastic occurrence in three New England estuaries. Water Emerging Contaminants & Nanoplastics, 3:2

  • Stasse A, K Meyer, E Williams, G Bradt, B Brown. First documentation of mating blue crabs, Callinectes sapidus, in Great Bay Estuary, New Hampshire. Northeastern Naturalist, 30:N8-N12

  • Milne G, J Miksis-Olds, A Stasse, B-Y Lee, D Wildord, B Brown. Evaluating Connectivity of Coastal Marine Habitats in the Gulf of Maine by Integrating Passive Acoustics and Metabarcoding. Oceanography, 36:100-101

2022:

  • Stasse, A, Cheng, ML, Meyer, K, Bumbera, N, Van Volkom, K, Laferriere, Dijkstra, JA, & Brown BL. Temporal Dynamics of Eastern Oyster Larval Abundance in Great Bay Estuary, New Hampshire. J. of Shellfish Research, 40:471-478

2021:

  • Jenkins JJ, KR Hartop, G Bukhara, DE Howton, KL Smalling, SV Size, ML Hladik, D Johnson, RO Draugelis—Dale, BL Brown (2021) Juvenile African clawed crogs ( Xenopus laevis) express growth, metamorphosis, mortality, gene expression, and metabolic changes when exposed to Thiamethoxam and Clothianidin. International Journal of Molecular Science, 10.3390/ijms222413291.

  • Cheng, ML, Lippmann, TC, Dijkstra, JA, Bradt, G, Cook, S, Choi, JG., & Brown, BL (2021) A baseline for microplastic particle occurrence and distribution in Great Bay Estuary. Marine Pollution Bulletin, 170:112653.

2020:

  • Giannopoulos, G, Hartop, KR, Brown, BL, Song, B, Elsgaard, L, & Franklin, RB (2020) Trace metal availability affects greenhouse gas emissions and microbial functional group abundance in freshwater wetland sediments. Frontiers in microbiology. 11:560861.

  • Reddington, K, Reddington, K, Eccles, D, O'Grady, J, Drown, DM, Hansen, LH, Nielsen, TK, Ducluzeau, AL, Leggett, RM, Heavens, D, Peel, N, Snutch, TP, Bayega, A, Oikonomopoulos, S, Ragoussis, I, Barry, T, van der Helm, E, Jolic, D, Richardson, H, Jansen, H, Tyson, JR, Jain, M, & Brown, BL (2020) Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals urban influence on river ecology. GigaScience. 9:1-12.

2019:

  • Giannopoulos, G, Lee, DY, Neubauer, SC, Brown, BL, & Franklin, RB (2019) A simple and effective sampler to collect undisturbed cores from tidal marshes. BioRxiv.

  • Hamner S, Brown BL, Hasan, NA, Franklin, MJ, Doyle, J, Eggers, MJ, Colwell, RR, & Ford, TE (2019) Metagenomic profiling of microbial pathogens in the Little Bighorn River, Montana. International Journal of Environmental Research and Public Health. 16: 1097.

  • Jenkins, J, Chauvin, M, Johnson, D, Brown, BL, Bailey, J, Kelly, A, & Kinter, B (2019) Defensible standardized policy assessments for grass carp (Ctenopharyngodon Idella, Cyprinidae) intercepted from the commercial supply chain. Journal of Great Lakes Research. 45:371-383.

2018:

  • Koch, J, Steffen, C, Goekler, J, Marteney, R, Jagels, J, & Brown, BL (2018) Comparison of diploid and triploid saugeye in Kansas impoundments. North American Journal of Fisheries Management. 38:446-453.

2017:

  • Brown, BL, Watson, M, Minot, SS, Rivera, MC, & Franklin, RB (2017) MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach. GigaScience. 6:1-10Lead article.

  • Jain, M, Tyson, JR, Loose, M, Ip, CLC, Eccles, DA, O’Grady, J, Malla, S, Leggett, RM, Wallerman, O, Hansen, HJ, Zalunin, V. Birney, E. Brown, BL, Snutch, TP, & Olsen, HE (2017) MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9 chemistry. F1000Research. 6:760.

  • Jenkins, JA, Draugelis-Dale, RO, Glennon, RP, Kelly, AM, Brown, BL, Morrison, JR  (2017) An accurate method for measuring triploidy of larval fish spawns. North American Journal of Aquaculture. 79:224-237

2015:

  • Brown, BL, LePrell, RV, Franklin, RB, Rivera, MC, Cabral, FM, Eaves, HL, Gardiakos, V, Keegan, KP, & King, TL (2015). Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River. Standards in Genomic Sciences. 10:65

  • Caplins, SA, Friedline, CJ, Brown, BL, & Turbeville, JM (2015) Microsatellites of the self-compatible nemertean Prosorhochmus americanus (Hoplonemertea). Conservation Genetics Resources. 7:399–401.

  • Fetherman, ER, Lepak, JM, Brown, BL, & Harris, DJ (2015) Optimizing times of initiation for triploid walleye production using pressure shock treatment.  North American Journal of Aquaculture. 77:471-477.

  • Ip, C, Loose, M, Tyson, J, Cesare, M, Brown, BL, Jain, M, Leggett, R, Eccles, D, Zalunin, V, Urban, J, Piazza, P, Bowden, R, Paten, B, Mwaigwisya, S, Batty, E, Simpson, J, Snutch, T, Birney, E, Buck, D, Goodwin, S, Jansen, H, O'Grady, J., & Olsen, H, & MinION Analysis and Reference Consortium. (2015) MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000Research. 4:1075.

  • Kester, KM, Eldeib, GM, & Brown, BL (2015) Genetic differentiation of two host-foodplant complex sources of the parasitic wasp, Cotesia congregatga (Say) [Hymenoptera: Braconidae]. Annals of the Entomological Society of America: Ecology and Population Biology. 108: 1014-1025.


2014:

  • Aunins, AW, Epifanio, JM, & Brown, BL (2014) Genetic evaluation of supplementation-assisted American shad restoration in James River, Virginia.  Marine and Coastal Fisheries 6: 127-141.

  • Kellogg, ML, Smyth, AR, Luckenbach, MW, Carmichael, RH, Brown, BL, Cornwell, JC, Piehler, MF, Owens, MS, Dalrymple, DJ, & Higgins, CB (2014) Use of oysters to mitigate eutrophication in coastal waters. Estuarine, Coastal and Shelf Science. 151: 156-168.

  • King, TL, Henderson, AP, Kynard, BE, Kieffer, MC, Peterson, DL, Aunins, AW, & Brown, BL (2014) A nuclear perspective on delineating evolutionarily significant lineages in polyploids: the case of the endangered shortnose sturgeon (Acipenser brevirostrum). PLOS ONE 9: e102784

  • Michalak, K, Czesny, S, Epifanio, J, Snyder, R, Schultz, E, Velotta, J, McCormick, S, Brown, BL, Santopietro, G, & Michalak, P (2014) Beta-thymosin gene polymorphism facilitates freshwater invasiveness of alewife (Alosa pseudoharengus). Journal of Experimental Zoology A: Ecological Genetics and Physiology 321A:233-240.

2013:

  • Aunins, AW, Brown, BL, Balazik, M, & Garman, G (2013) Migratory movements of American shad in the James River fall-zone, Virginia. North American Journal of Fish Management. 33:569-575.

  • Higgins, CB, Stephenson, K, Tobias, C, Piehler, MF, Smyth, A, Dame, R, & Brown, BL (2013) Effect of aquacultured oyster biodeposition on sediment N2 production in Chesapeake Bay. Marine Ecology Progress Series473: 7-27.

  • Morrissey, EM, Jenkins, AS, Brown, BL, & Franklin, RB (2013) Resource availability effects on nitrate-reducing microbial communities in a freshwater wetland. Wetlands. 33:301-310.

2011:

  • Ashe, K, Chiu, WL, Khalifa, AM, Nicolas, AN, Brown, BL, DeMartino, RR, Alexander, CP, Waggener, CT, Fischer-Stenger, K, & Stewart, JK (2011) Vesicular monoamine transporter-1 (VMAT-1) mRNA and immunoreactive proteins in mouse brain. Neuroendocrinology Letters. 32: 253-258.

  • Campbell, AH, Meritt, DW, Franklin, RB, Boone, EL, Nicely, CT, & Brown, BL (2011) Effects of age and composition of field-produced biofilms on oyster larval setting. Biofouling 27: 255-265.

  • Franklin, RB, Campbell, AH, Higgins, CB, Barker, MK, & Brown, BL (2011) Enumerating bacterial cells on bioadhesive coated slides. Journal of Microbial Methods 87: 154-160.

  • Higgins, CB, Stephenson, K, & Brown, BL (2011) Nutrient bioassimilation capacity of aquacultured oysters: quantification of an ecosystem service. Journal of Environmental Quality. 40:0271-277.

2010:

  • Kester, KM, Toothman, MH, Brown, BL, Street, WS, & Cruz, T (2010) Recovery of environmental human DNA by insects. Journal of Forensic Science 55: 1545-1551.

2009:

  • Wang, HP, Li, L, Wallat, G, Brown, BL, Yao, H, Gao, Z, Tiu, L, O’Bryant, P, Rapp, D, & MacDonald, R (2009) Evaluation of relative growth performance and genotype by environment effects for cross-bred yellow perch families reared in communal ponds using DNA parentage analyses. Aquaculture Research. 2009: 1-11.

  • Zhan, A, Wang, Y, Brown, BL, & Wang, P. (2009) Isolation and Characterization of Novel Microsatellite Markers for Yellow Perch (Perca flavescens). International Journal of Molecular Sciences. 10: 18–27.

2008:

  • Shrinivas, K, Kester, KM, Mitchell, ADSS, Martin, PAW, & Brown, BL (2008) Molecular markers to determine ecological fate of Bacillus thuringiensis subsp. kurstaki. Molecular Ecology Resources. Molecular Ecology Resources 8: 1145-1148.

  • Toothman, MH, Kester, KM, Champagne, J, Cruz, TD, Street IV, WS, & Brown, BL (2008) Characterization of human DNA in environmental samples. Forensic Science International. 178: 7-15.

2007:

  • Brown, BL, Li, L, Givens, CB, Wang, HP, Wallat, GK, & Tiu, LG (2007) Genetic evaluation of six yellow perch broodstock groups. Aquaculture: 271: 142-151.

  • Li, L, Wang, HP., Givens, CB, Czesny, S, & Brown, BL (2007) Isolation and characterization of microsatellites in yellow perch (Perca flavescens). Molecular Ecology Notes. 7: 600-603.

2005:

  • Brown, BL, Butt, AJ, Meritt, D, & Paynter, KT (2005) Evaluation of resistance to Dermo in eastern oyster strains tested in Chesapeake Bay. Aquaculture Research. 36: 1544-1554.

  • Brown, BL, Butt, AJ, Shelton, SW, Meritt, D, & Paynter, KT (2005) Resistance of Dermo in eastern oysters, Crassostrea virginica (Gmellin), of North Carolina but not Chesapeake Bay heritage. Aquaculture Research. 36: 1391-1399.

  • Rudd, ML, Nicolas, AN, Brown, BL, Fischer-Stenger, K., & Stewart, J.K. (2005) Peritoneal macrophages express the serotonin transporter. Journal of Neuroimmunology. 159: 113-118.

  • Webb, SR, Garman, GC, McIninch, SP, Nerad, TA, Peglar, MT, Gillevet, PM, & Brown, BL (2005) Etiology of ulcerative lesions of Atlantic menhaden (Brevoortia tyrannus) from James River, Virginia.  Parasitology Research. 97: 358-366.

2003:

  • Ettinger, MR, Webb, SR, Harris, SA, McIninch, SP, Garman, GC, & Brown, BL (2003) Distribution of free-living amoebae in James River, Virginia, USA. Parasitology Research. 89: 6-15.


2002:

  • Jensen, MK, Kester, KM, Kankare, M, & Brown, BL (2002) Characterization of microsatellite loci in the parasitoid, Cotesia congregata (Say) [Hymenoptera]. Molecular Ecology Notes 2:346-348.

  • Webb, SR, Garman, GC, McIninch, SP & Brown, BL (2002) Amoebae associated with ulcerative lesions of fish from tidal freshwater of the James River, Virginia. Journal of Aquatic Animal Health. 14: 68-76.

2001:

  • Anderson, J, Webb, S, Fischer, R, Kester, K, & Brown, BL (2001) Baseline and in vivo total photoluminescence of endospore material using the parasitoid wasp C. congregata. Applied Spectroscopy, 55: 684-689.

  • Couch, CR, Waters, JM, Pagels, JF, & Brown, BL (2001) Genetic structuring of relict populations of the red-backed vole (Clethrionomys gapperi). J. Mammal. 82: 152-164.

  • Schultz, SLW, Steinkoenig, EL, & Brown, BL (2001) Ploidy of feral grass carp in the Chesapeake Bay watershed. N. Amer. Jouranl of Fish Management. 21:96-101.

2000:

  • Brown, BL, Schultz, SLW, & White, FKH (2000) A convenient field method of tissue preservation for flow cytometric ploidy assessment of grass carp. Transactions of the American Fisheries Society. 129: 1354-1359.

  • Brown, BL, Franklin, DE., Gaffney, P, Hong, M, DenDanto, D., & Kornfield, I. (2000). Characterization of microsatellite loci useful in ecological and aquaculture genetics of oysters. Molecular Ecology. 9: 2217-2219.

  • Brown, BL, Gunter, T, Waters, J, & Epifanio, J (2000) Evaluating genetic diversity associated with propagation-assisted restoration of American shad. Conservation Biology 14: 294-303.

  • Butt, AJ, & Brown, BL (2000) The cost of nutrient reduction: a case study of Chesapeake Bay. Coastal Management. 28: 175-185.

  • Day, JM, Franklin, DE, & Brown, BL (2000) Use of competitive PCR to detect and quantify Haplosporidium nelsoni infection (MSX disease) in the eastern oyster, Crassostrea virginica. Molec. Mar. Biol. 2: 456-465.

  • Niculescu, VA, Chinnici, JP, & Brown, BL (2000) Attitudes in physics education: an alternative approach to teaching physics to non-science college students. J. Math Sci. Collab. Explor. 3: 119-129.

  • Waters, J, Epifanio, J, Gunter, T, & Brown, BL (2000) Homing behaviour facilitates subtle population differentiation among river populations of Alosa sapidissima: microsatellites and mtDNA. J. Fish Biol. 56: 622-636.


[Book Chapters]

  • King, TL, Eackles, MS., Aunins, AW, Brockmann, HJ, Hallerman, E, & Brown, BL (2015) Conservation genetics of the American horseshoe crab (Limulus polyphemus): allelic diversity , zones of genetic discontinuity, and regional differentiation. Chapter 4 in: ML Botton, ed., Changing global perspectives on biology, conservation, and management of horseshoe crabs. Springer, New York. ISBN 978-319-19542-1

  • Brown, BL & Epifanio, JM (2003) Nuclear DNA. Chapter 6 in Genetic Principles and Practices for Fisheries Scientists. pp. 101-123, E.M. Hallerman editor. American Fisheries Society. Bethesda, Maryland.

  • Hallerman, EM, Brown, BL, & Epifanio, J (2003) Introduction to Fisheries Genetics Principles. Chapter 1 in Genetic Principles and Practices for Fisheries Scientists. pp. 3-20 E.M. Hallerman editor. American Fisheries Society. Bethesda, Maryland.